I was out riding about 1000km this weekend with my wife, since I haven't got my Zumo 660 yet I used the Nuvi 765t from the car, mounted it and the Motostation temporary just next to front instrument gauge and powered it from the power outlet, it works fine, but it is a bit annoying that the power cuts out for a second when you start the bike, so the Motostation reboots everytime.
I think i will power it directly from the battery via a fuse and a switch, that way you can start all the stuff up before you turn the ignition, since it takes a while for everything to boot up, also that way you don't loose the power if you take a brake.
The battery will last for several day even if you let the GPS and Motostation on, but I will use the switch to turn it of during the nights, I had this setup on a previous bike and it worked fine.
Now I haven't tested it, but to mount the Motostation under the seat might not be the best place since you have the seat and your body in the way, on the other hand, I had bluetooth dongles mounted under the seat on a previous bike and those worked very well so it might work, but try it before you mount it permanently and let us know how it works out.